Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs10587800 chr6:127622141 TACC/T 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs10588955 chr6:127660919 CAA/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs10631696 chr17:39433308 C/CCTT 0.000125 110 0 19.23 13.15 KM Plot
LAML rs10633704 chr6:127650518 A/ATT 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs10644705 chr6:127707784 T/TAGA 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs10700206 chr2:241405400 C/CGTG 6.96E-6 106 1.03 11.62 19.23 KM Plot
LAML rs10740831 chr10:31015182 A/G 0.000176 111 1 6.58 16.2 KM Plot
LAML rs10744555 chr12:1949463 T/C 0.00017 107 0 20.27 12.2 KM Plot
LAML rs10745291 chr10:134976554 C/T 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs10765610 chr11:93150836 T/G 5.99E-5 110 6.13 14.13 16.3 KM Plot
LAML rs10779924 chr2:39208057 G/T 0.000134 111 0 5.57 16.27 KM Plot
LAML rs10831035 chr11:93150392 G/C 5.23E-5 111 6.13 14.13 16.27 KM Plot
LAML rs10831036 chr11:93150394 G/A 5.23E-5 111 6.13 14.13 16.27 KM Plot
LAML rs10831044 chr11:93161528 A/G 5.99E-5 110 6.13 14.13 16.3 KM Plot
LAML rs10857671 chr10:134965099 C/T 2.85E-5 110 16.3 19.8 3 KM Plot